[ADD] vector plot

[ADD] switch for filtering on textures

src/dataHandler/WDataTexture3D.cpp

@@ -38,7 +38,8 @@ WDataTexture3D::WDataTexture3D( boost::shared_ptr<WValueSetBase> valueSet, boost
     m_valueSet( valueSet ),
     m_grid( boost::shared_dynamic_cast< WGridRegular3D >( grid ) ),
     m_changeCondition( new WCondition() ),
-    m_globalActive( true )
+    m_globalActive( true ),
+    m_interpolation( true )
 {
     // initialize members
 }
@@ -463,3 +464,14 @@ float WDataTexture3D::scaleInterval( float value ) const
     //return ( value - m_minValue ) / m_scale;
 }
 
+bool WDataTexture3D::isInterpolated()
+{
+    return m_interpolation;
+}
+
+void WDataTexture3D::setInterpolation( bool interpol )
+{
+    m_interpolation = interpol;
+    notifyChange();
+}
+

src/dataHandler/WDataTexture3D.h

@@ -158,6 +158,18 @@ public:
      */
     float getMinMaxScale();
 
+    /**
+     * getter
+     */
+    bool isInterpolated();
+
+    /**
+     * setter
+     *
+     * \param interpol
+     */
+    void setInterpolation( bool interpol );
+
 protected:
 
     /**
@@ -249,6 +261,11 @@ protected:
      */
     bool m_globalActive;
 
+    /**
+     * flag denotes whether the texture filter should active or not
+     */
+    bool m_interpolation;
+
     /**
      * This method finds the minimum and maximum value of a dataset. These values get used to scale the texture to use the maximum precision.
      *

src/kernel/WCrosshair.cpp

+//---------------------------------------------------------------------------
+//
+// Project: OpenWalnut ( http://www.openwalnut.org )
+//
+// Copyright 2009 OpenWalnut Community, BSV@Uni-Leipzig and CNCF@MPI-CBS
+// For more information see http://www.openwalnut.org/copying
+//
+// This file is part of OpenWalnut.
+//
+// OpenWalnut is free software: you can redistribute it and/or modify
+// it under the terms of the GNU Lesser General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// OpenWalnut is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with OpenWalnut. If not, see <http://www.gnu.org/licenses/>.
+//
+//---------------------------------------------------------------------------
+
+#include "WCrosshair.h"
+
+WCrosshair::WCrosshair()
+{
+}
+
+WCrosshair::~WCrosshair()
+{
+}
+
+wmath::WPosition WCrosshair::getPosition()
+{
+    return m_position;
+}
+
+void WCrosshair::setPosition( wmath::WPosition position )
+{
+    m_position = position;
+}

src/kernel/WCrosshair.h

+//---------------------------------------------------------------------------
+//
+// Project: OpenWalnut ( http://www.openwalnut.org )
+//
+// Copyright 2009 OpenWalnut Community, BSV@Uni-Leipzig and CNCF@MPI-CBS
+// For more information see http://www.openwalnut.org/copying
+//
+// This file is part of OpenWalnut.
+//
+// OpenWalnut is free software: you can redistribute it and/or modify
+// it under the terms of the GNU Lesser General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// OpenWalnut is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with OpenWalnut. If not, see <http://www.gnu.org/licenses/>.
+//
+//---------------------------------------------------------------------------
+
+#ifndef WCROSSHAIR_H
+#define WCROSSHAIR_H
+
+#include <boost/shared_ptr.hpp>
+#include "../common/math/WVector3D.h"
+
+/**
+ * TODO(schurade): Document this!
+ */
+class WCrosshair
+{
+public:
+    /**
+     * TODO(schurade): Document this!
+     */
+    WCrosshair();
+
+    /**
+     * TODO(schurade): Document this!
+     */
+    ~WCrosshair();
+
+    /**
+     * getter
+     */
+    wmath::WPosition getPosition();
+
+    /**
+     * setter
+     *
+     * \param position
+     */
+    void setPosition( wmath::WPosition position );
+
+protected:
+private:
+    wmath::WPosition m_position; //!< stores the position
+};
+
+#endif  // WCROSSHAIR_H

src/kernel/WKernel.cpp

@@ -96,6 +96,8 @@ void WKernel::init()
     findAppPath();
     m_roiManager = boost::shared_ptr< WROIManagerFibers >( new WROIManagerFibers() );
 
+    m_selectionManager = boost::shared_ptr< WSelectionManager >( new WSelectionManager() );
+
     // get module factory
     m_moduleFactory = WModuleFactory::getModuleFactory();
 
@@ -256,3 +258,8 @@ std::string WKernel::getFontPath()
     findAppPath();
     return WKernel::m_fontPath.file_string();
 }
+
+boost::shared_ptr< WSelectionManager>WKernel::getSelectionManager()
+{
+    return m_selectionManager;
+}

src/kernel/WKernel.h

@@ -37,6 +37,7 @@
 #include "../graphicsEngine/WGraphicsEngine.h"
 #include "../gui/WGUI.h"
 #include "../modules/fiberDisplay/WROIManagerFibers.h"
+#include "WSelectionManager.h"
 #include "WModule.h"
 #include "WModuleContainer.h"
 #include "WModuleFactory.h"
@@ -167,6 +168,10 @@ public:
      */
     boost::shared_ptr< WROIManagerFibers>getRoiManager();
 
+    /**
+     * get for selection manager
+     */
+    boost::shared_ptr< WSelectionManager>getSelectionManager();
 
     /**
      * getter for font path
@@ -196,6 +201,11 @@ protected:
      */
     boost::shared_ptr< WROIManagerFibers >m_roiManager;
 
+    /**
+     * pointer to a selection manager
+     */
+    boost::shared_ptr< WSelectionManager >m_selectionManager;
+
     /**
      * The module factory to use.
      */

src/kernel/WModuleFactory.cpp

@@ -53,6 +53,7 @@
 #include "../modules/voxelizer/WMVoxelizer.h"
 #include "../modules/triangleMeshRenderer/WMTriangleMeshRenderer.h"
 #include "../modules/writeNIfTI/WMWriteNIfTI.h"
+#include "../modules/vectorPlot/WMVectorPlot.h"
 #include "WModuleFactory.h"
 #include "exceptions/WPrototypeNotUnique.h"
 #include "exceptions/WPrototypeUnknown.h"
@@ -104,6 +105,7 @@ void WModuleFactory::load()
     m_prototypes.insert( boost::shared_ptr< WModule >( new WMFiberSelection() ) );
     m_prototypes.insert( boost::shared_ptr< WModule >( new WMSurfaceParticles() ) );
     m_prototypes.insert( boost::shared_ptr< WModule >( new WMClusterSlicer() ) );
+    m_prototypes.insert( boost::shared_ptr< WModule >( new WMVectorPlot() ) );
 
     lock.unlock();
 

src/kernel/WSelectionManager.cpp

+//---------------------------------------------------------------------------
+//
+// Project: OpenWalnut ( http://www.openwalnut.org )
+//
+// Copyright 2009 OpenWalnut Community, BSV@Uni-Leipzig and CNCF@MPI-CBS
+// For more information see http://www.openwalnut.org/copying
+//
+// This file is part of OpenWalnut.
+//
+// OpenWalnut is free software: you can redistribute it and/or modify
+// it under the terms of the GNU Lesser General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// OpenWalnut is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with OpenWalnut. If not, see <http://www.gnu.org/licenses/>.
+//
+//---------------------------------------------------------------------------
+
+#include "WSelectionManager.h"
+
+WSelectionManager::WSelectionManager()
+{
+    m_crosshair = boost::shared_ptr< WCrosshair >( new WCrosshair() );
+}
+
+WSelectionManager::~WSelectionManager()
+{
+}
+
+boost::shared_ptr< WCrosshair >WSelectionManager::getCrosshair()
+{
+    return m_crosshair;
+}

src/kernel/WSelectionManager.h

+//---------------------------------------------------------------------------
+//
+// Project: OpenWalnut ( http://www.openwalnut.org )
+//
+// Copyright 2009 OpenWalnut Community, BSV@Uni-Leipzig and CNCF@MPI-CBS
+// For more information see http://www.openwalnut.org/copying
+//
+// This file is part of OpenWalnut.
+//
+// OpenWalnut is free software: you can redistribute it and/or modify
+// it under the terms of the GNU Lesser General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// OpenWalnut is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with OpenWalnut. If not, see <http://www.gnu.org/licenses/>.
+//
+//---------------------------------------------------------------------------
+
+#ifndef WSELECTIONMANAGER_H
+#define WSELECTIONMANAGER_H
+
+#include <boost/shared_ptr.hpp>
+
+#include "WCrosshair.h"
+
+/**
+ * manages the several selection tools
+ */
+class WSelectionManager
+{
+public:
+    /**
+     * standard constructor
+     */
+    WSelectionManager();
+
+    /**
+     * destructor
+     */
+    virtual ~WSelectionManager();
+
+    /**
+     * getter
+     */
+    boost::shared_ptr< WCrosshair >getCrosshair();
+
+protected:
+private:
+    boost::shared_ptr< WCrosshair >m_crosshair; //!< stores pointer to crosshair
+};
+
+#endif  // WSELECTIONMANAGER_H

src/modules/CMakeLists.txt

@@ -7,3 +7,4 @@ ADD_SUBDIRECTORY( voxelizer )
 ADD_SUBDIRECTORY( clusterParamDisplay )
 ADD_SUBDIRECTORY( clusterSlicer )
 ADD_SUBDIRECTORY( contourTree )
+ADD_SUBDIRECTORY( vectorPlot )

src/modules/data/WMData.cpp

@@ -130,6 +130,10 @@ void WMData::propertyChanged( boost::shared_ptr< WPropertyBase > property )
         {
             m_dataSet->getTexture()->setGloballyActive( m_active->get() );
         }
+        else if ( property == m_interpolation )
+        {
+            m_dataSet->getTexture()->setInterpolation( m_interpolation->get() );
+        }
     }
     else
     {

src/modules/fiberDisplay/WMFiberDisplay.h

@@ -34,7 +34,6 @@
 #include "../../kernel/WModuleInputData.h"
 
 #include "../../graphicsEngine/WShader.h"
-#include "../../common/math/WPosition.h"
 
 #include "WTubeDrawable.h"
 

src/modules/navSlices/WMNavSlices.cpp

@@ -460,6 +460,8 @@ osg::ref_ptr<osg::Geometry> WMNavSlices::createGeometry( int slice )
         quad->push_back( 0 );
         sliceGeometry->addPrimitiveSet( quad );
     }
+    WKernel::getRunningKernel()->getSelectionManager()->getCrosshair()->setPosition(
+            wmath::WPosition( m_sagittalPos->get(), m_coronalPos->get(), m_axialPos->get() ) );
 
     return sliceGeometry;
 }
@@ -537,6 +539,17 @@ void WMNavSlices::updateTextures()
             for ( std::vector< boost::shared_ptr< WDataTexture3D > >::const_iterator iter = tex.begin(); iter != tex.end(); ++iter )
             {
                 osg::ref_ptr<osg::Texture3D> texture3D = ( *iter )->getTexture();
+
+                if ( ( *iter )->isInterpolated() )
+                {
+                    texture3D->setFilter( osg::Texture::MIN_FILTER, osg::Texture::LINEAR );
+                    texture3D->setFilter( osg::Texture::MAG_FILTER, osg::Texture::LINEAR );
+                }
+                else
+                {
+                    texture3D->setFilter( osg::Texture::MIN_FILTER, osg::Texture::NEAREST );
+                    texture3D->setFilter( osg::Texture::MAG_FILTER, osg::Texture::NEAREST );
+                }
                 rootState->setTextureAttributeAndModes( c, texture3D, osg::StateAttribute::ON );
 
                 // set threshold/opacity as uniforms

src/modules/vectorPlot/WMVectorPlot.h

+//---------------------------------------------------------------------------
+//
+// Project: OpenWalnut ( http://www.openwalnut.org )
+//
+// Copyright 2009 OpenWalnut Community, BSV@Uni-Leipzig and CNCF@MPI-CBS
+// For more information see http://www.openwalnut.org/copying
+//
+// This file is part of OpenWalnut.
+//
+// OpenWalnut is free software: you can redistribute it and/or modify
+// it under the terms of the GNU Lesser General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// OpenWalnut is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public License
+// along with OpenWalnut. If not, see <http://www.gnu.org/licenses/>.
+//
+//---------------------------------------------------------------------------
+
+#ifndef WMVECTORPLOT_H
+#define WMVECTORPLOT_H
+
+#include <string>
+#include <vector>
+
+#include <osg/Geode>
+
+#include "../../kernel/WModule.h"
+#include "../../kernel/WModuleInputData.h"
+#include "../../kernel/WModuleOutputData.h"
+
+#include "../../common/math/WVector3D.h"
+
+/**
+ * This module is intended to be a simple template and example module. It can be used for fast creation of new modules by copying and refactoring
+ * the files. It shows the basic usage of properties, update callbacks and how to wait for data.
+ * \ingroup modules
+ */
+class WMVectorPlot: public WModule
+{
+public:
+
+    /**
+     * Default constructor.
+     */
+    WMVectorPlot();
+
+    /**
+     * Destructor.
+     */
+    virtual ~WMVectorPlot();
+
+    /**
+     * Gives back the name of this module.
+     * \return the module's name.
+     */
+    virtual const std::string getName() const;
+
+    /**
+     * Gives back a description of this module.
+     * \return description to module.
+     */
+    virtual const std::string getDescription() const;
+
+    /**
+     * Due to the prototype design pattern used to build modules, this method returns a new instance of this method. NOTE: it
+     * should never be initialized or modified in some other way. A simple new instance is required.
+     *
+     * \return the prototype used to create every module in OpenWalnut.
+     */
+    virtual boost::shared_ptr< WModule > factory() const;
+
+    /**
+     * Get the icon for this module in XPM format.
+     */
+    virtual const char** getXPMIcon() const;
+
+protected:
+
+    /**
+     * Entry point after loading the module. Runs in separate thread.
+     */
+    virtual void moduleMain();
+
+    /**
+     * Initialize the connectors this module is using.
+     */
+    virtual void connectors();
+
+    /**
+     * Initialize the properties for this module.
+     */
+    virtual void properties();
+
+    /**
+     * The root node used for this modules graphics. For OSG nodes, always use osg::ref_ptr to ensure proper resource management.
+     */
+    osg::ref_ptr<osg::Geode> m_rootNode;
+
+    /**
+     * Callback for m_active. Overwrite this in your modules to handle m_active changes separately.
+     */
+    virtual void activate();
+
+private:
+    /**
+     * creates a vector plot on the currently selected slices
+     */
+    osg::ref_ptr<osg::Geometry> buildPlotSlices();
+
+
+    /**
+     * An input connector used to get datasets from other modules. The connection management between connectors must not be handled by the module.
+     */
+    boost::shared_ptr< WModuleInputData< WDataSetSingle > > m_input;
+
+    /**
+     * This is a pointer to the dataset the module is currently working on.
+     */
+    boost::shared_ptr< WDataSetSingle > m_dataSet;
+
+    /**
+     * A condition used to notify about changes in several properties.
+     */
+    boost::shared_ptr< WCondition > m_propCondition;
+
+    /**
+     * list of positions to plot vectors on, this will come from a selection tool class
+     */
+    boost::shared_ptr< std::vector< wmath::WPosition > > m_positions;
+
+    /**
+     * projects the vectors on the slice.
+     */
+    WPropBool     m_projectOnSlice;
+
+    /**
+     * Switches between a set color or direction color coding.
+     */
+    WPropBool     m_coloringMode;
+
+
+
+    /**
+     * An integer value.
+     */
+    WPropInt      m_xPos;
+
+    /**
+     * An integer value.
+     */
+    WPropInt      m_yPos;
+
+    /**
+     * An integer value.
+     */
+    WPropInt      m_zPos;
+
+    /**
+     * A color.
+     */
+    WPropColor    m_aColor;
+
+    /**
+     * Node callback to change the color of the shapes inside the root node. For more details on this class, refer to the documentation in
+     * moduleMain().
+     */
+    class SafeUpdateCallback : public osg::NodeCallback
+    {
+    public: // NOLINT
+
+        /**
+         * Constructor.
+         *
+         * \param module just set the creating module as pointer for later reference.
+         */
+        explicit SafeUpdateCallback( WMVectorPlot* module ): m_module( module ), m_initialUpdate( true )
+        {
+        };
+
+        /**
+         * operator () - called during the update traversal.
+         *
+         * \param node the osg node
+         * \param nv the node visitor
+         */
+        virtual void operator()( osg::Node* node, osg::NodeVisitor* nv );
+
+        /**
+         * Pointer used to access members of the module to modify the node.
+         */
+        WMVectorPlot* m_module;
+
+        /**
+         * Denotes whether the update callback is called the first time.
+         */
+        bool m_initialUpdate;
+    };
+
+    /**
+     * This shows how to write custom constraints for your modules. Please refer to the documentation in properties() for more details.
+     *
+     * \note: always use WPVBaseTypes to specialize the PropertyVariable template.
+     */
+    class StringLength: public WPropertyVariable< WPVBaseTypes::PV_STRING >::PropertyConstraint
+    {
+        /**
+         * You need to overwrite this method. It decides whether the specified new value should be accepted or not.
+         *
+         * \param property the property thats going to be changed.
+         * \param value the new value
+         *
+         * \return true if the new value is OK.
+         */
+        virtual bool accept( boost::shared_ptr< WPropertyVariable< WPVBaseTypes::PV_STRING > >  property, WPVBaseTypes::PV_STRING value );
+    };
+};
+
+#endif  // WMVECTORPLOT_H
+

src/modules/vectorPlot/template.xpm

+/* XPM */
+static const char * template_xpm[] = {
+"16 16 2 1",
+" 	c None",
+".	c #000000",
+"                ",
+"                ",
+"   ..........   ",
+"   ..........   ",
+"       ..       ",
+"       ..       ",
+"       ..       ",
+"       ..       ",
+"       ..       ",
+"       ..       ",