[CHANGE] - copy of resources works properly and doc targets added

doc/developer/doxygenConfig

@@ -613,9 +613,6 @@ RECURSIVE              = YES
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 
 EXCLUDE                = src/ext \
-                         src/core/dataHandler/io/nifti \
-                         src/core/dataHandler/io/biosig \
-                         src/core/dataHandler/io/biosigWin \
                          src/core/common/platformDependent/visualStudio/inttypes.h \
                          src/modules/lic/fibernavigator \
                          src/modules/lic/fantom

doc/developer/doxygenConfigFull

@@ -613,9 +613,6 @@ RECURSIVE              = YES
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 
 EXCLUDE                = src/ext \
-                         src/core/dataHandler/io/nifti \
-                         src/core/dataHandler/io/biosig \
-                         src/core/dataHandler/io/biosigWin \
                          src/core/common/platformDependent/visualStudio/inttypes.h \
                          src/modules/lic/fibernavigator \
                          src/modules/lic/fantom

src/CMakeLists.txt

@@ -174,12 +174,13 @@ INCLUDE_DIRECTORIES( ${OPENSCENEGRAPH_INCLUDE_DIRS} )
 #
 # ---------------------------------------------------------------------------------------------------------------------------------------------------
 
+# TODO(all): is this needed?
+INCLUDE( FindPythonInterp )
+
 # -----------------------------------------------------------------------------------------------------------------------------------------------
 # CXX Test
 # See http://cxxtest.tigris.org
 
-INCLUDE( FindPythonInterp )
-
 # Try to find it
 FIND_PACKAGE( CxxTest QUIET )
 MARK_AS_ADVANCED( CXXTEST_PERL_TESTGEN_EXECUTABLE )
@@ -254,3 +255,44 @@ ADD_SUBDIRECTORY( core )
 # build core
 # ADD_SUBDIRECTORY( qt4gui )
 
+# ---------------------------------------------------------------------------------------------------------------------------------------------------
+# 
+# Resource Copy
+#  - This simply copies the structure from ../resources to the build directory
+#
+# ---------------------------------------------------------------------------------------------------------------------------------------------------
+
+# as all the resources with the correct directory structure reside in ../resources, this target is very easy to handle
+SET( ResourcesPath "${PROJECT_SOURCE_DIR}/../resources" )
+ADD_CUSTOM_TARGET( ResourceConfiguration
+    ALL
+    COMMAND ${CMAKE_COMMAND} -E copy_directory "${ResourcesPath}" "${PROJECT_BINARY_DIR}/"
+    COMMENT "Copying resources to build directory"
+)
+
+# ---------------------------------------------------------------------------------------------------------------------------------------------------
+# 
+# Documentation
+#  - Call doxygen here
+#
+# ---------------------------------------------------------------------------------------------------------------------------------------------------
+
+#let doxygen do the work
+ADD_CUSTOM_TARGET( doc
+                   COMMAND doxygen ${PROJECT_SOURCE_DIR}/../doc/developer/doxygenConfig
+                   COMMAND chmod -R g+r ${PROJECT_SOURCE_DIR}/../doc/developer/html
+                   WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/..
+                   COMMENT "Build doxygen documentation"
+                   VERBATIM
+                 )
+
+# NOTE: this full documentation also includes call/caller graphs, colaboration graphs and nicer inheritance graphs
+# but needs "dot" from graphviz to render them.
+ADD_CUSTOM_TARGET( fulldoc
+                   COMMAND doxygen ${PROJECT_SOURCE_DIR}/../doc/developer/doxygenConfigFull
+                   COMMAND chmod -R g+r ${PROJECT_SOURCE_DIR}/../doc/developer/htmlFull
+                   WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/..
+                   COMMENT "Build verbose doxygen documentation"
+                   VERBATIM
+                 )
+

src/core/CMakeLists.txt

@@ -54,7 +54,8 @@ TARGET_LINK_LIBRARIES( ${OWCoreName} ${OWExtBioSigName} ${OWExtEEPName} ${OWExtN
 SETUP_TESTS( "${CORE_TEST_FILES}" "${OWCoreName}" "" )
 
 # ---------------------------------------------------------------------------------------------------------------------------------------------------
-# Copy Resources
+# Copy Shaders
 # ---------------------------------------------------------------------------------------------------------------------------------------------------
 
 
+

tools/CMakeModules/CopyFonts.cmake

-# this is a script that puts all fonts to the right place
-#--------------------------------------------------------------------
-
-execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${CMAKE_BINARY_DIR}/bin/${SHARED_FILES_RELATIVE}/fonts)
-FILE( GLOB_RECURSE ALL_GE_FONTS ${OW_SOURCE_DIR}/core/graphicsEngine/fonts/* )
-FOREACH( fname ${ALL_GE_FONTS} )
-  #message( ${fname} )
-  configure_file(  ${fname} ${CMAKE_BINARY_DIR}/bin/${SHARED_FILES_RELATIVE}/fonts/ COPYONLY)
-ENDFOREACH( fname )
-

tools/CMakeModules/CopyShellScripts.cmake

-# this is a script that puts all needed shell scripts to the right place
-#-----------------------------------------------------------------------
-
-execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${CMAKE_BINARY_DIR})
-FILE( GLOB_RECURSE ALL_SHELLSCRIPTS ${OW_SOURCE_DIR}/../scripts/* )
-FOREACH( fname ${ALL_SHELLSCRIPTS} )
-    #message( ${fname} )
-    configure_file(  ${fname} ${CMAKE_BINARY_DIR}/bin/ COPYONLY)
-ENDFOREACH( fname )

tools/CMakeModules/CopyShellScriptsWin.cmake

-# this is a script that puts all needed shell scripts to the right place
-#-----------------------------------------------------------------------
-
-  SET( CMAKE_BINARY_DIRWIN ${CMAKE_BINARY_DIR}/bin )
-  message( ${CMAKE_BINARY_DIRWIN} )
-  execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${CMAKE_BINARY_DIRWIN})
-
-FILE( GLOB_RECURSE ALL_SHELLSCRIPTS ${OW_SOURCE_DIR}/../scripts/* )
-FOREACH( fname ${ALL_SHELLSCRIPTS} )
-    #message( ${fname} )
-    configure_file(  ${fname} ${CMAKE_BINARY_DIR}/bin/ COPYONLY)
-ENDFOREACH( fname )