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When loading a .nii.gz file, the loader may instead load a .nii file with the same name, if one exists in the same directory. This might be a "feature" of the nifti lib. Other tools (e.g. FSL) will not load data if multiple files with the same basename exist, maybe for this reason.

Tested on up-to-date Debian unstable. Can anyone confirm this problem on another OS?

HowTo:

• create different datasets test.nii and test.nii.gz
• try to load test.nii.gz
• check if it loaded test.nii instead

(from redmine: created on 2012-10-26, closed on 2012-10-30)