GitLab

[REMOVE] - removed LIC module. It was not complying our style/doc guidelines, it was slow, modified data illegally, and the worst: it contained source which is NOT opensource (numerical recipies). You can revive the module if you remove the fibernavigator/fantom code AND use eigen3 for those copyright-critical parts.

[ADD] - modules compile. Only two modules have their own CmakeLists (Template-Module: for documentation/example and DetTractClustering: cuda stuff). The others are handled automatically.

[FIX] - they were not really ported. Missing Includes, Wrong Includes. Fixed. Re-Added to module-base toolbox.

[CHANGE] removed all modules from the toolboxes. We bring them back in with proper eigen3 support one after the other.

[ADD] - added basic implementation of simple, dragable slices. They will soon replace the NavSlice module.

[CHANGE] - textureMapper module uses old colormapping. colormapper module uses new colormapping mechanism.

[ADD] - added a more generic scheme for preprocessing shader codes. It is now more comfortable to handle define-statements or various compile-time options in shaders.

[FIX] Enabled the voxelizer to work with the new grid and also reinserted deleted modules and commented them out in the modules-base.toolbox

The current changes include:
- only one transformation matrix + its inverse
- only one constructor

This is supposed to be a starting point, we can add the missing functionality back into the grid from here.

Things to consider:
- please DO NOT re-add any of the additional datafields

Suggestions & TODO:
- use strategy pattern for the transformations
  - efficient storage of transformation parameters
- clean up a lot of the code (eg in encloses and getVoxelNum etc) that does transformations
- ...

[CHANGE] - our build system now supports module toolboxes. All our current modules where sorted into one of the toolboxes. The file modules-user.toolbox is not versioned and can be used for user defined lists of modules.